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dntps  (New England Biolabs)


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    Structured Review

    New England Biolabs dntps
    Dntps, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 2109 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dntp+mix/DeoxyNT+Solution+Mix/bio_rxiv__64898__2026__10__14__759079-166-19-20
    Average 99 stars, based on 2109 article reviews
    dntps - by Bioz Stars, 2026-11
    99/100 stars

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    Related Articles

    Construct:

    Article Title: Differential adenosine to inosine RNA editing of SINE B2 non-coding RNAs in mouse unveils a novel type of epi-transcriptome response to amyloid beta neuro-toxicity
    Article Snippet: Briefly, 9.5uL of RNA was mixed with 1uL RTA adaptor (Nanopore), 1.5uL T4 DNA ligase (NEB, M0202M) and 3uL NEBNext quick ligation buffer (NEB, B6058S), and incubated for 15min at room temperature. .. The first-strand synthesis reaction was constructed from the ligation product by adding 9uL H2O, 2uL dNTP mix (NEB, N0447S), 8uL FS buffer (Invitrogen, 18080093), 4uL 0.1M DTT (Invitrogen, 18080093) and 2uL Superscript III reverse transcriptase (Invitrogen, 18080093) and incubated at 50C for 50min, 70C for 10min, then placed immediately on ice. .. The sample was then subjected to a 1.8X bead clean up using the vendor recommended protocol with Mag-Bind TotalPure NGS beads (Omega Bio-Tek, M1378), eluting in 23uL H2O.

    Ligation:

    Article Title: Differential adenosine to inosine RNA editing of SINE B2 non-coding RNAs in mouse unveils a novel type of epi-transcriptome response to amyloid beta neuro-toxicity
    Article Snippet: Briefly, 9.5uL of RNA was mixed with 1uL RTA adaptor (Nanopore), 1.5uL T4 DNA ligase (NEB, M0202M) and 3uL NEBNext quick ligation buffer (NEB, B6058S), and incubated for 15min at room temperature. .. The first-strand synthesis reaction was constructed from the ligation product by adding 9uL H2O, 2uL dNTP mix (NEB, N0447S), 8uL FS buffer (Invitrogen, 18080093), 4uL 0.1M DTT (Invitrogen, 18080093) and 2uL Superscript III reverse transcriptase (Invitrogen, 18080093) and incubated at 50C for 50min, 70C for 10min, then placed immediately on ice. .. The sample was then subjected to a 1.8X bead clean up using the vendor recommended protocol with Mag-Bind TotalPure NGS beads (Omega Bio-Tek, M1378), eluting in 23uL H2O.

    Reverse Transcription:

    Article Title: Differential adenosine to inosine RNA editing of SINE B2 non-coding RNAs in mouse unveils a novel type of epi-transcriptome response to amyloid beta neuro-toxicity
    Article Snippet: Briefly, 9.5uL of RNA was mixed with 1uL RTA adaptor (Nanopore), 1.5uL T4 DNA ligase (NEB, M0202M) and 3uL NEBNext quick ligation buffer (NEB, B6058S), and incubated for 15min at room temperature. .. The first-strand synthesis reaction was constructed from the ligation product by adding 9uL H2O, 2uL dNTP mix (NEB, N0447S), 8uL FS buffer (Invitrogen, 18080093), 4uL 0.1M DTT (Invitrogen, 18080093) and 2uL Superscript III reverse transcriptase (Invitrogen, 18080093) and incubated at 50C for 50min, 70C for 10min, then placed immediately on ice. .. The sample was then subjected to a 1.8X bead clean up using the vendor recommended protocol with Mag-Bind TotalPure NGS beads (Omega Bio-Tek, M1378), eluting in 23uL H2O.

    Incubation:

    Article Title: Differential adenosine to inosine RNA editing of SINE B2 non-coding RNAs in mouse unveils a novel type of epi-transcriptome response to amyloid beta neuro-toxicity
    Article Snippet: Briefly, 9.5uL of RNA was mixed with 1uL RTA adaptor (Nanopore), 1.5uL T4 DNA ligase (NEB, M0202M) and 3uL NEBNext quick ligation buffer (NEB, B6058S), and incubated for 15min at room temperature. .. The first-strand synthesis reaction was constructed from the ligation product by adding 9uL H2O, 2uL dNTP mix (NEB, N0447S), 8uL FS buffer (Invitrogen, 18080093), 4uL 0.1M DTT (Invitrogen, 18080093) and 2uL Superscript III reverse transcriptase (Invitrogen, 18080093) and incubated at 50C for 50min, 70C for 10min, then placed immediately on ice. .. The sample was then subjected to a 1.8X bead clean up using the vendor recommended protocol with Mag-Bind TotalPure NGS beads (Omega Bio-Tek, M1378), eluting in 23uL H2O.

    Article Title: Ribosome Molecular Aging Shapes Translation Dynamics
    Article Snippet: .. Then, 8.5 μL of RT master mix composed of 4 μL 5X First Strand (FS) Buffer, 1 μL 0.1 M DTT, 2 μL 10 mM dNTP mix, 0.5 μL RNase inhibitor, and 1 μL SuperScript III (ThermoFisher, 18080085) was added on ice, then incubated at 55°C for 30 minutes, then held at 4°C. .. To clean-up the reaction, 4 μL Exo-SAP IT (ThermoFisher, 75001.1.ML) was added and incubated for 30 min at 37°C.

    Polymerase Chain Reaction:

    Article Title: Trio-sequencing Reveals High Germline Mutation Rates in the Colorado Potato Beetle ( Leptinotarsa decemlineata )
    Article Snippet: .. PCR was performed under following conditions: 98 °C for 30 s; 35 cycles of 98 °C for 10 s, 64 °C (or 61 °C for low-GC amplicons) for 30 s and 72 °C for 20 s; a final extension at 72 °C for 2 min. Each 50 μl reaction contained 10 μl 5 × Q5 Reaction Buffer, 1 μl 10 mM dNTP mix, 2.5 μl of each primer (10 μM; final 0.5 μM), 1 μl genomic DNA, 0.5 μl Q5 High-Fidelity DNA Polymerase (New England Biolabs) and 32.5 μl nuclease-free water. .. PCR products were purified using Macherey-Nagel NucleoSpin PCR Clean-up Kit.

    Article Title: Methylation detection and analysis of mammalian DNA
    Article Snippet: Add 100 uL 10 mM dTTP (NEB N0443S), 100 uL 10 mM dGTP (NEB N0442S), 100 uL 10 mM dATP (NEB N0440S) to 100 uL 10 mM 5-methyl-dCTP (NEB N0356S) then mix thoroughly by vortexing, store at −20° C. 2. .. Make PCR Mix (23 uL per cell): a) 7 uL Q5 Reaction Buffer (included with Q5): b) 7 uL Q5 High GC Enhancer (included with Q5): c) 2.8 uL dNTP mix within 5-methyl-dCTP (2.5 mM each nt): d) 0.7 uL 100 mM MgCl2 (Invitrogen AM9530G): e) 0.35 uL Q5 (NEB M0491S): f) 1 ul 20 ng/ul lambda carrier DNA (sonicated 200-300 bp): g) 4.15 μl H2O. ..

    other:

    Article Title: Targeting cancer-associated cell surface RNAs with oligonucleotide-drug conjugates enables broad antitumor activity
    Article Snippet: Phi29 DNA polymerase (Thermo Fisher Scientific, EP0094). dNTP mix (New England Biolabs, N0447L).

    CRISPR:

    Article Title: An Asymmetric Stem-Loop Translator Enhances Specificity of One-Pot Isothermal CRISPR/Cas12a Assay.
    Article Snippet: Sensitive and specific detection of molecular biomarkers is fundamental to clinical diagnostics and biomedical research, yet existing CRISPR-based assays often suffer from nonspecific activation and cross-reactivity.. Here, we introduce an asymmetric stem-loop translator that markedly enhances the specificity of a one-pot isothermal strand displacement amplification (SDA)-CRISPR/Cas12a assay.. The asymmetric probe enables precise molecular recognition and controlled signal transduction, converting diverse targets into amplifiable DNA intermediates.

    Blocking Assay:

    Article Title: An Asymmetric Stem-Loop Translator Enhances Specificity of One-Pot Isothermal CRISPR/Cas12a Assay.
    Article Snippet: Sensitive and specific detection of molecular biomarkers is fundamental to clinical diagnostics and biomedical research, yet existing CRISPR-based assays often suffer from nonspecific activation and cross-reactivity.. Here, we introduce an asymmetric stem-loop translator that markedly enhances the specificity of a one-pot isothermal strand displacement amplification (SDA)-CRISPR/Cas12a assay.. The asymmetric probe enables precise molecular recognition and controlled signal transduction, converting diverse targets into amplifiable DNA intermediates.

    Sonication:

    Article Title: Methylation detection and analysis of mammalian DNA
    Article Snippet: Add 100 uL 10 mM dTTP (NEB N0443S), 100 uL 10 mM dGTP (NEB N0442S), 100 uL 10 mM dATP (NEB N0440S) to 100 uL 10 mM 5-methyl-dCTP (NEB N0356S) then mix thoroughly by vortexing, store at −20° C. 2. .. Make PCR Mix (23 uL per cell): a) 7 uL Q5 Reaction Buffer (included with Q5): b) 7 uL Q5 High GC Enhancer (included with Q5): c) 2.8 uL dNTP mix within 5-methyl-dCTP (2.5 mM each nt): d) 0.7 uL 100 mM MgCl2 (Invitrogen AM9530G): e) 0.35 uL Q5 (NEB M0491S): f) 1 ul 20 ng/ul lambda carrier DNA (sonicated 200-300 bp): g) 4.15 μl H2O. ..



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